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Sample GSM1003863 Query DataSets for GSM1003863
Status Public on Dec 18, 2012
Title UPN 775109, 3 day Mock treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: mock
aml sample identifier: 775109
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_Mock_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.685865845
cg00000108 0.950061079
cg00000109 0.915732164
cg00000165 0.210744658
cg00000236 0.909007839
cg00000289 0.733401691
cg00000292 0.889836016
cg00000321 0.233362586
cg00000363 0.36754565
cg00000622 0.030048908
cg00000658 0.822442755
cg00000714 0.257519441
cg00000721 0.940263605
cg00000734 0.108604141
cg00000769 0.064078924
cg00000807 0.89443692
cg00000884 0.905381931
cg00000905 0.112608956
cg00000924 0.600969682
cg00000948 0.916706883

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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