GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003862 Query DataSets for GSM1003862
Status Public on Dec 18, 2012
Title UPN 775109, 3 day DAC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 775109
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_DAC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.491564977
cg00000108 0.865304311
cg00000109 0.743619717
cg00000165 0.239592759
cg00000236 0.739997379
cg00000289 0.602826163
cg00000292 0.640394044
cg00000321 0.179530284
cg00000363 0.310522835
cg00000622 0.024708725
cg00000658 0.639722166
cg00000714 0.210023931
cg00000721 0.744024962
cg00000734 0.097907873
cg00000769 0.043859453
cg00000807 0.64371425
cg00000884 0.840466701
cg00000905 0.144187064
cg00000924 0.615428819
cg00000948 0.713005899

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap