GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003861 Query DataSets for GSM1003861
Status Public on Dec 18, 2012
Title UPN 775109, 3 day DAC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 775109
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_DAC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.497020799
cg00000108 0.762160575
cg00000109 0.709335877
cg00000165 0.232197119
cg00000236 0.718457504
cg00000289 0.638847332
cg00000292 0.699058522
cg00000321 0.183396697
cg00000363 0.307656511
cg00000622 0.02373266
cg00000658 0.632466519
cg00000714 0.22663024
cg00000721 0.740116213
cg00000734 0.103069835
cg00000769 0.068437561
cg00000807 0.665143585
cg00000884 0.794240458
cg00000905 0.134609015
cg00000924 0.587385152
cg00000948 0.738389921

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap