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Sample GSM1003860 Query DataSets for GSM1003860
Status Public on Dec 18, 2012
Title UPN 775109, 3 day AraC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 775109
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_AraC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.705441823
cg00000108 0.949252231
cg00000109 0.9259927
cg00000165 0.218789635
cg00000236 0.892075921
cg00000289 0.717771921
cg00000292 0.881914773
cg00000321 0.255081414
cg00000363 0.389017998
cg00000622 0.023274413
cg00000658 0.844310548
cg00000714 0.261356629
cg00000721 0.931273431
cg00000734 0.124812945
cg00000769 0.058327324
cg00000807 0.925084907
cg00000884 0.900808574
cg00000905 0.10564447
cg00000924 0.579787803
cg00000948 0.889905281

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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