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Sample GSM1003859 Query DataSets for GSM1003859
Status Public on Dec 18, 2012
Title UPN 775109, 3 day AraC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 775109
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_AraC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.687658201
cg00000108 0.951261776
cg00000109 0.923044233
cg00000165 0.213732724
cg00000236 0.903885855
cg00000289 0.735985088
cg00000292 0.888423131
cg00000321 0.27424242
cg00000363 0.384520098
cg00000622 0.015645194
cg00000658 0.840718411
cg00000714 0.248886475
cg00000721 0.925027354
cg00000734 0.097339751
cg00000769 0.056429413
cg00000807 0.894339491
cg00000884 0.897606646
cg00000905 0.107574527
cg00000924 0.602215608
cg00000948 0.924514222

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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