|
Status |
Public on Dec 18, 2012 |
Title |
UPN 737451, 3 day Mock treatment, array plate number 7 |
Sample type |
genomic |
|
|
Source name |
Bone marrow biopsy, mock
|
Organism |
Homo sapiens |
Characteristics |
disease status: acute myeloid leukemia (AML) fab: M5 molecular classification: normal karyotype gender: female age: 21 years tissue: bone marrow treatment: mock aml sample identifier: 737451 array plate number: 7
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina protocol.
|
|
|
Hybridization protocol |
Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
|
Scan protocol |
Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
|
Description |
737451_Mock_7
|
Data processing |
BeadStudio software v3.2.
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
Dec 18, 2012 |
Contact name |
Nobish Varghese |
E-mail(s) |
nvarghese@path.wustl.edu
|
Organization name |
Washington University in St.Louis
|
Street address |
4444 Forest Park Ave.
|
City |
StLouis |
State/province |
MO |
ZIP/Postal code |
63110 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE40870 |
Transient low-dose decitabine treatment of primary AML samples |
GSE40871 |
Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine |
|