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Sample GSM1003857 Query DataSets for GSM1003857
Status Public on Dec 18, 2012
Title UPN 737451, 3 day Mock treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: normal karyotype
gender: female
age: 21 years
tissue: bone marrow
treatment: mock
aml sample identifier: 737451
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 737451_Mock_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.559764661
cg00000108 0.942797568
cg00000109 0.89897855
cg00000165 0.550178538
cg00000236 0.725034159
cg00000289 0.753126952
cg00000292 0.744722518
cg00000321 0.566501873
cg00000363 0.805730101
cg00000622 0.031944224
cg00000658 0.809282818
cg00000714 0.263140626
cg00000721 0.920034377
cg00000734 0.123956356
cg00000769 0.080255398
cg00000807 0.826618637
cg00000884 0.877011906
cg00000905 0.127128362
cg00000924 0.483003377
cg00000948 0.883345222

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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