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Sample GSM1003856 Query DataSets for GSM1003856
Status Public on Dec 18, 2012
Title UPN 737451, 3 day DAC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: normal karyotype
gender: female
age: 21 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 737451
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 737451_DAC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.554037901
cg00000108 0.8859094
cg00000109 0.837519444
cg00000165 0.600298141
cg00000236 0.666546101
cg00000289 0.626116164
cg00000292 0.730778218
cg00000321 0.602292695
cg00000363 0.782219159
cg00000622 0.017364683
cg00000658 0.77731413
cg00000714 0.232454673
cg00000721 0.86758114
cg00000734 0.090102715
cg00000769 0.04714556
cg00000807 0.779103969
cg00000884 0.815431588
cg00000905 0.082773661
cg00000924 0.567315449
cg00000948 0.847003562

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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