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Sample GSM1003855 Query DataSets for GSM1003855
Status Public on Dec 18, 2012
Title UPN 737451, 3 day DAC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: normal karyotype
gender: female
age: 21 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 737451
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 737451_DAC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.509431025
cg00000108 0.876924367
cg00000109 0.884406121
cg00000165 0.533908023
cg00000236 0.652246684
cg00000289 0.65197816
cg00000292 0.661860049
cg00000321 0.549291581
cg00000363 0.753429647
cg00000622 0.024661744
cg00000658 0.744358024
cg00000714 0.242236847
cg00000721 0.825471315
cg00000734 0.109430614
cg00000769 0.083446351
cg00000807 0.773249281
cg00000884 0.864748476
cg00000905 0.139220723
cg00000924 0.494530664
cg00000948 0.831675156

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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