GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003854 Query DataSets for GSM1003854
Status Public on Dec 18, 2012
Title UPN 737451, 3 day AraC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: normal karyotype
gender: female
age: 21 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 737451
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 737451_AraC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.676213269
cg00000108 0.924358494
cg00000109 0.891836583
cg00000165 0.598430199
cg00000236 0.727961335
cg00000289 0.726608931
cg00000292 0.745145859
cg00000321 0.581395891
cg00000363 0.826316784
cg00000622 0.024772449
cg00000658 0.845468351
cg00000714 0.244781786
cg00000721 0.944784955
cg00000734 0.133545045
cg00000769 0.064296805
cg00000807 0.868762874
cg00000884 0.854127046
cg00000905 0.113720189
cg00000924 0.572114868
cg00000948 0.899251434

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap