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Sample GSM1003853 Query DataSets for GSM1003853
Status Public on Dec 18, 2012
Title UPN 737451, 3 day AraC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: normal karyotype
gender: female
age: 21 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 737451
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 737451_AraC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.566580319
cg00000108 0.92600972
cg00000109 0.915724971
cg00000165 0.579741991
cg00000236 0.723603673
cg00000289 0.732150086
cg00000292 0.705021656
cg00000321 0.553627082
cg00000363 0.804477236
cg00000622 0.028939959
cg00000658 0.805941093
cg00000714 0.261152422
cg00000721 0.895015818
cg00000734 0.151692374
cg00000769 0.083703899
cg00000807 0.841579669
cg00000884 0.862078195
cg00000905 0.154622586
cg00000924 0.498843155
cg00000948 0.896616834

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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