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Sample GSM1003852 Query DataSets for GSM1003852
Status Public on Dec 18, 2012
Title UPN 721214, 3 day Mock treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: unknown
gender: female
age: 41 years
tissue: bone marrow
treatment: mock
aml sample identifier: 721214
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 721214_Mock_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.40974377
cg00000108 0.933555596
cg00000109 0.910376368
cg00000165 0.228495984
cg00000236 0.829936522
cg00000289 0.723982218
cg00000292 0.6838751
cg00000321 0.13468976
cg00000363 0.16677031
cg00000622 0.030487292
cg00000658 0.865891238
cg00000714 0.292746268
cg00000721 0.924410769
cg00000734 0.116321239
cg00000769 0.064060337
cg00000807 0.821802481
cg00000884 0.852451476
cg00000905 0.105619494
cg00000924 0.584105503
cg00000948 0.902825263

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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