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Sample GSM1003851 Query DataSets for GSM1003851
Status Public on Dec 18, 2012
Title UPN 721214, 3 day Mock treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: unknown
gender: female
age: 41 years
tissue: bone marrow
treatment: mock
aml sample identifier: 721214
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 721214_Mock_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.330315828
cg00000108 0.936619787
cg00000109 0.895096845
cg00000165 0.201069004
cg00000236 0.82050359
cg00000289 0.69463502
cg00000292 0.645882611
cg00000321 0.128297102
cg00000363 0.175877984
cg00000622 0.031170529
cg00000658 0.845772974
cg00000714 0.284459142
cg00000721 0.928056928
cg00000734 0.128149005
cg00000769 0.095419745
cg00000807 0.799439694
cg00000884 0.900212889
cg00000905 0.120982458
cg00000924 0.484254598
cg00000948 0.904974085

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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