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Sample GSM1003850 Query DataSets for GSM1003850
Status Public on Dec 18, 2012
Title UPN 721214, 3 day DAC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: unknown
gender: female
age: 41 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 721214
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 721214_DAC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.39404751
cg00000108 0.903987072
cg00000109 0.85502395
cg00000165 0.236597137
cg00000236 0.771420103
cg00000289 0.668788643
cg00000292 0.628440615
cg00000321 0.131692705
cg00000363 0.159468616
cg00000622 0.024376678
cg00000658 0.785210794
cg00000714 0.276438362
cg00000721 0.871552371
cg00000734 0.11713675
cg00000769 0.052252348
cg00000807 0.788139407
cg00000884 0.848202475
cg00000905 0.124257224
cg00000924 0.61386875
cg00000948 0.883560807

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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