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Sample GSM1003849 Query DataSets for GSM1003849
Status Public on Dec 18, 2012
Title UPN 721214, 3 day DAC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: unknown
gender: female
age: 41 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 721214
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 721214_DAC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.354995424
cg00000108 0.911612547
cg00000109 0.864029598
cg00000165 0.186970175
cg00000236 0.786310217
cg00000289 0.630663405
cg00000292 0.641711054
cg00000321 0.128156858
cg00000363 0.137508049
cg00000622 0.027459286
cg00000658 0.783386502
cg00000714 0.270628961
cg00000721 0.867688113
cg00000734 0.095543121
cg00000769 0.071065146
cg00000807 0.757934491
cg00000884 0.843916375
cg00000905 0.21639381
cg00000924 0.483896414
cg00000948 0.882136518

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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