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Sample GSM1003848 Query DataSets for GSM1003848
Status Public on Dec 18, 2012
Title UPN 721214, 3 day AraC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: unknown
gender: female
age: 41 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 721214
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 721214_AraC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.409784722
cg00000108 0.940191976
cg00000109 0.900101244
cg00000165 0.24553109
cg00000236 0.819301158
cg00000289 0.778505936
cg00000292 0.661297541
cg00000321 0.121313159
cg00000363 0.186294223
cg00000622 0.030915025
cg00000658 0.866462902
cg00000714 0.269405255
cg00000721 0.922809837
cg00000734 0.113982391
cg00000769 0.057650292
cg00000807 0.813686978
cg00000884 0.824976642
cg00000905 0.154021673
cg00000924 0.578218612
cg00000948 0.891314403

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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