GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003846 Query DataSets for GSM1003846
Status Public on Dec 18, 2012
Title UPN 632729, 3 day Mock treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: mock
aml sample identifier: 632729
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_Mock_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.535797888
cg00000108 0.950795782
cg00000109 0.90928725
cg00000165 0.145163882
cg00000236 0.878353176
cg00000289 0.725991729
cg00000292 0.657140949
cg00000321 0.177550495
cg00000363 0.487143018
cg00000622 0.023857353
cg00000658 0.831100381
cg00000714 0.173779599
cg00000721 0.924593805
cg00000734 0.125143223
cg00000769 0.06256834
cg00000807 0.810964443
cg00000884 0.888326403
cg00000905 0.117236607
cg00000924 0.603120893
cg00000948 0.875938612

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap