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Sample GSM1003845 Query DataSets for GSM1003845
Status Public on Dec 18, 2012
Title UPN 632729, 3 day Mock treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: mock
aml sample identifier: 632729
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_Mock_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.457833687
cg00000108 0.947188968
cg00000109 0.912654617
cg00000165 0.143220308
cg00000236 0.863204824
cg00000289 0.709399375
cg00000292 0.698929603
cg00000321 0.1565963
cg00000363 0.479269278
cg00000622 0.022901648
cg00000658 0.837370551
cg00000714 0.191208979
cg00000721 0.922412108
cg00000734 0.086971284
cg00000769 0.064418039
cg00000807 0.811923111
cg00000884 0.900716924
cg00000905 0.110921675
cg00000924 0.606922863
cg00000948 0.852665903

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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