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Sample GSM1003844 Query DataSets for GSM1003844
Status Public on Dec 18, 2012
Title UPN 632729, 3 day DAC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 632729
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_DAC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.534530478
cg00000108 0.922990237
cg00000109 0.86467977
cg00000165 0.16843142
cg00000236 0.810571147
cg00000289 0.639162364
cg00000292 0.647909446
cg00000321 0.124536076
cg00000363 0.482075548
cg00000622 0.02208783
cg00000658 0.809705537
cg00000714 0.19294954
cg00000721 0.886144873
cg00000734 0.105259842
cg00000769 0.058705389
cg00000807 0.786096941
cg00000884 0.867271174
cg00000905 0.113765505
cg00000924 0.608910556
cg00000948 0.861504428

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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