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Sample GSM1003843 Query DataSets for GSM1003843
Status Public on Dec 18, 2012
Title UPN 632729, 3 day DAC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 632729
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_DAC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.489330768
cg00000108 0.920689603
cg00000109 0.864925537
cg00000165 0.181935709
cg00000236 0.844882867
cg00000289 0.698560842
cg00000292 0.611807991
cg00000321 0.168641153
cg00000363 0.471550081
cg00000622 0.02375992
cg00000658 0.786822139
cg00000714 0.182289115
cg00000721 0.892102833
cg00000734 0.107090569
cg00000769 0.077324664
cg00000807 0.773558343
cg00000884 0.854294861
cg00000905 0.163228535
cg00000924 0.617065751
cg00000948 0.895630215

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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