GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003842 Query DataSets for GSM1003842
Status Public on Dec 18, 2012
Title UPN 632729, 3 day AraC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 632729
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_AraC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.544273752
cg00000108 0.935109461
cg00000109 0.87899422
cg00000165 0.17237515
cg00000236 0.868745859
cg00000289 0.697161406
cg00000292 0.664169376
cg00000321 0.138491754
cg00000363 0.477066619
cg00000622 0.027942738
cg00000658 0.837636547
cg00000714 0.180485757
cg00000721 0.917929372
cg00000734 0.108835261
cg00000769 0.072496128
cg00000807 0.817584934
cg00000884 0.879013131
cg00000905 0.139282068
cg00000924 0.615676542
cg00000948 0.901269707

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap