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Sample GSM1003841 Query DataSets for GSM1003841
Status Public on Dec 18, 2012
Title UPN 632729, 3 day AraC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: male
age: 75 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 632729
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 632729_AraC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.543869106
cg00000108 0.94576035
cg00000109 0.903643125
cg00000165 0.172757546
cg00000236 0.868754934
cg00000289 0.753416596
cg00000292 0.660391822
cg00000321 0.134213683
cg00000363 0.479524143
cg00000622 0.026645514
cg00000658 0.828767011
cg00000714 0.17001614
cg00000721 0.933376064
cg00000734 0.105539458
cg00000769 0.072508012
cg00000807 0.78699281
cg00000884 0.881203828
cg00000905 0.170099709
cg00000924 0.635949315
cg00000948 0.900322003

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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