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Sample GSM1003840 Query DataSets for GSM1003840
Status Public on Dec 18, 2012
Title UPN 410324, 3 day Mock treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: mock
aml sample identifier: 410324
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_Mock_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.111319343
cg00000108 0.92769805
cg00000109 0.919952327
cg00000165 0.305731177
cg00000236 0.734592127
cg00000289 0.640091058
cg00000292 0.501537317
cg00000321 0.42284514
cg00000363 0.229269673
cg00000622 0.021810113
cg00000658 0.839770741
cg00000714 0.163707643
cg00000721 0.926141794
cg00000734 0.120907136
cg00000769 0.058449558
cg00000807 0.820024359
cg00000884 0.86315454
cg00000905 0.124168756
cg00000924 0.593322841
cg00000948 0.903860013

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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