GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003839 Query DataSets for GSM1003839
Status Public on Dec 18, 2012
Title UPN 410324, 3 day Mock treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: mock
aml sample identifier: 410324
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_Mock_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.137901749
cg00000108 0.933486073
cg00000109 0.886386547
cg00000165 0.286758029
cg00000236 0.652788464
cg00000289 0.651294027
cg00000292 0.460883936
cg00000321 0.403242666
cg00000363 0.220635334
cg00000622 0.040137383
cg00000658 0.851998524
cg00000714 0.171257394
cg00000721 0.936723643
cg00000734 0.132778164
cg00000769 0.083392423
cg00000807 0.812150484
cg00000884 0.885648069
cg00000905 0.136816846
cg00000924 0.482828971
cg00000948 0.887341171

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap