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Sample GSM1003838 Query DataSets for GSM1003838
Status Public on Dec 18, 2012
Title UPN 410324, 3 day DAC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 410324
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_DAC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.152202932
cg00000108 0.934126022
cg00000109 0.848702437
cg00000165 0.276221662
cg00000236 0.629029928
cg00000289 0.591046397
cg00000292 0.474736279
cg00000321 0.420220928
cg00000363 0.240808446
cg00000622 0.031726209
cg00000658 0.805565807
cg00000714 0.130451915
cg00000721 0.878188147
cg00000734 0.114284081
cg00000769 0.065558364
cg00000807 0.755222608
cg00000884 0.82543135
cg00000905 0.153157796
cg00000924 0.586905789
cg00000948 0.782908912

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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