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Sample GSM1003837 Query DataSets for GSM1003837
Status Public on Dec 18, 2012
Title UPN 410324, 3 day DAC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 410324
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_DAC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.120552931
cg00000108 0.910398491
cg00000109 0.869346582
cg00000165 0.277054341
cg00000236 0.626528112
cg00000289 0.58990165
cg00000292 0.45293687
cg00000321 0.392925648
cg00000363 0.217024853
cg00000622 0.03493744
cg00000658 0.79173024
cg00000714 0.165169134
cg00000721 0.868133312
cg00000734 0.141642903
cg00000769 0.085096952
cg00000807 0.736940333
cg00000884 0.868680194
cg00000905 0.157365433
cg00000924 0.486414684
cg00000948 0.773502513

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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