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Sample GSM1003836 Query DataSets for GSM1003836
Status Public on Dec 18, 2012
Title UPN 410324, 3 day AraC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 410324
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_AraC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.081384387
cg00000108 0.927942323
cg00000109 0.881042258
cg00000165 0.326029451
cg00000236 0.726798731
cg00000289 0.649469361
cg00000292 0.47276112
cg00000321 0.436316017
cg00000363 0.215166583
cg00000622 0.018117246
cg00000658 0.838478528
cg00000714 0.160304585
cg00000721 0.938735015
cg00000734 0.116885145
cg00000769 0.064179187
cg00000807 0.843296795
cg00000884 0.861618324
cg00000905 0.12206304
cg00000924 0.583171191
cg00000948 0.911121869

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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