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Sample GSM1003835 Query DataSets for GSM1003835
Status Public on Dec 18, 2012
Title UPN 410324, 3 day AraC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 60 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 410324
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 410324_AraC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.097703621
cg00000108 0.92334093
cg00000109 0.88167387
cg00000165 0.245670536
cg00000236 0.649811407
cg00000289 0.605725864
cg00000292 0.472158432
cg00000321 0.392015105
cg00000363 0.22999035
cg00000622 0.026475323
cg00000658 0.825705624
cg00000714 0.185856876
cg00000721 0.916551737
cg00000734 0.149361635
cg00000769 0.080868714
cg00000807 0.817042822
cg00000884 0.868597535
cg00000905 0.138915595
cg00000924 0.481648268
cg00000948 0.905430564

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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