|
Status |
Public on Sep 13, 2012 |
Title |
Stanford_ChipSeq_ES-E14_H3K4me1_std |
Sample type |
SRA |
|
|
Source name |
ES-E14
|
Organism |
Mus musculus |
Characteristics |
lab: Stanford-m lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: ES-E14 cell organism: mouse cell description: mouse embryonic stem cell line E14 cell sex: M antibody: H3K4me1 antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1 antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts. antibody vendorname: Abcam antibody vendorid: ab8895 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. age: E0 age description: Embryonic day 0 (stem cell) control: std control description: Standard input signal for most experiments. controlid: ES-E14/None/Input/std labversion: PeakSeq1.0 strain: 129/Ola strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
|
Biomaterial provider |
Santos lab
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9185 |
Series (3) |
GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX186789 |
BioSample |
SAMN01174205 |
Named Annotation |
GSM1003750_mm9_wgEncodeSydhHistEse14H3k04me1StdSig.bigWig |