|
| Status |
Public on Sep 13, 2012 |
| Title |
Stanford_ChipSeq_MEL_H3K36me3B_DMSO_2.0pct_std |
| Sample type |
SRA |
| |
|
| Source name |
MEL
|
| Organism |
Mus musculus |
| Characteristics |
lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: H3K36me3B
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36) marks actively transcribed chromatin regions
antibody vendorname: Cell Signaling
antibody vendorid: 9763S
treatment: DMSO_2.0pct
treatment description: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
control: std
control description: Standard input signal for most experiments.
age: immortalized
age description: Immortal cells
control: std
control description: Standard input signal for most experiments.
controlid: MEL/DMSO_2.0pct/Input/std
strain: Unknown
strain description: Unknown strain origin
|
| Biomaterial provider |
Weissman lab
|
| Treatment protocol |
DMSO_2.0pct
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (2) |
| GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| SRA |
SRX186788 |
| BioSample |
SAMN01174204 |
| Named Annotation |
GSM1003749_mm9_wgEncodeSydhHistMelH3k36me3bDm2p5dStdSig.bigWig |
