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Sample GSM1000152 Query DataSets for GSM1000152
Status Public on Sep 10, 2012
Title LICR_ChipSeq_Liver_H3K79me2_adult-8wks
Sample type SRA
Source name Liver
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Liver
cell organism: mouse
cell description: Liver
cell sex: M
antibody: H3K79me2
antibody antibodydescription: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname: Active Motif
antibody vendorid: 39143
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001452
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Liver_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX185873
BioSample SAMN01163891
Named Annotation GSM1000152_mm9_wgEncodeLicrHistoneLiverH3k79me2MAdult8wksC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000152_mm9_wgEncodeLicrHistoneLiverH3k79me2MAdult8wksC57bl6StdPk.broadPeak.gz 807.8 Kb (ftp)(http) BROADPEAK
GSM1000152_mm9_wgEncodeLicrHistoneLiverH3k79me2MAdult8wksC57bl6StdSig.bigWig 63.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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