GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1000123 Query DataSets for GSM1000123
Status Public on Sep 10, 2012
Title LICR_ChipSeq_ES-E14_H3K9ac_E0
Sample type SRA
Source name ES-E14
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: ES-E14
cell organism: mouse
biomaterial_type: mouse embryonic stem cells
cell sex: M
antibody: H3K9ac
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac
antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: Abcam
antibody vendorid: ab4441
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: ES-E14/Input/std
labversion: Pooled & filtered
softwareversion: MACS
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
Biomaterial provider Santos lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX185844
BioSample SAMN01163862
Named Annotation GSM1000123_mm9_wgEncodeLicrHistoneEse14H3k09acME0129olaStdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000123_mm9_wgEncodeLicrHistoneEse14H3k09acME0129olaStdPk.broadPeak.gz 443.7 Kb (ftp)(http) BROADPEAK
GSM1000123_mm9_wgEncodeLicrHistoneEse14H3k09acME0129olaStdSig.bigWig 45.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap