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Sample GSM1000122 Query DataSets for GSM1000122
Status Public on Sep 10, 2012
Title LICR_ChipSeq_CH12_H3K79me2_immortalized
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K79me2
antibody antibodydescription: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname: Active Motif
antibody vendorid: 39143
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM003164
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX185843
BioSample SAMN01163861
Named Annotation GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdPk.broadPeak.gz 408.5 Kb (ftp)(http) BROADPEAK
GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdSig.bigWig 53.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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