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Sample GSM1000122 Query DataSets for GSM1000122
Status Public on Sep 10, 2012
Title LICR_ChipSeq_CH12_H3K79me2_immortalized
Sample type SRA
 
Source name CH12
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K79me2
antibody antibodydescription: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname: Active Motif
antibody vendorid: 39143
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM003164
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX185843
BioSample SAMN01163861
Named Annotation GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdPk.broadPeak.gz 408.5 Kb (ftp)(http) BROADPEAK
GSM1000122_mm9_wgEncodeLicrHistoneCh12H3k79me2FImmortalC57bl6StdSig.bigWig 53.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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