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Sample GSM1000119 Query DataSets for GSM1000119
Status Public on Sep 10, 2012
Title LICR_ChipSeq_CH12_H3K4me1_immortalized
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: immortalized
biomaterial_type: immortalized cell line
age: immortalized
biomaterial_type: immortalized cell line
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM003164
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX185840
BioSample SAMN01163858
Named Annotation GSM1000119_mm9_wgEncodeLicrHistoneCh12H3k04me1FImmortalC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000119_mm9_wgEncodeLicrHistoneCh12H3k04me1FImmortalC57bl6StdPk.broadPeak.gz 779.2 Kb (ftp)(http) BROADPEAK
GSM1000119_mm9_wgEncodeLicrHistoneCh12H3k04me1FImmortalC57bl6StdSig.bigWig 54.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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