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Sample GSM1000109 Query DataSets for GSM1000109
Status Public on Sep 10, 2012
Title LICR_ChipSeq_ES-Bruce4_H3K36me3_E0
Sample type SRA
 
Source name ES-Bruce4
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: ES-Bruce4
cell organism: mouse
biomaterial_type: mouse embryonic stem cells
cell sex: M
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001683
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider University of California, San Diego Transgenic Core and Embryonic Stem Cell
Growth protocol ES-Bruce4_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX185830
BioSample SAMN01163848
Named Annotation GSM1000109_mm9_wgEncodeLicrHistoneEsb4H3k36me3ME0C57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000109_mm9_wgEncodeLicrHistoneEsb4H3k36me3ME0C57bl6StdPk.broadPeak.gz 781.3 Kb (ftp)(http) BROADPEAK
GSM1000109_mm9_wgEncodeLicrHistoneEsb4H3k36me3ME0C57bl6StdSig.bigWig 53.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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