GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1000104 Query DataSets for GSM1000104
Status Public on Sep 10, 2012
Title LICR_ChipSeq_OlfactBulb_H3K4me1_adult-8wks
Sample type SRA
Source name OlfactBulb
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: OlfactBulb
cell organism: mouse
cell description: Olfactory Bulb
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM002473
labversion: Pooled & filtered
softwareversion: Peaks
softwareversion description: Regions of enriched signal in experiment
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider LICR lab
Growth protocol OlfactoryBulb_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX185825
BioSample SAMN01163843
Named Annotation GSM1000104_mm9_wgEncodeLicrHistoneOlfactH3k04me1MAdult8wksC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000104_mm9_wgEncodeLicrHistoneOlfactH3k04me1MAdult8wksC57bl6StdPk.broadPeak.gz 877.1 Kb (ftp)(http) BROADPEAK
GSM1000104_mm9_wgEncodeLicrHistoneOlfactH3k04me1MAdult8wksC57bl6StdSig.bigWig 41.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap