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Sample GSM1000085 Query DataSets for GSM1000085
Status Public on Sep 10, 2012
Title LICR_ChipSeq_Limb_H3K4me1_E14.5
Sample type SRA
 
Source name Limb
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Limb
cell organism: mouse
cell description: Limb
cell sex: U
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: E14.5
age description: Embryonic day 14.5
age: E14.5
age description: Embryonic day 14.5
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM002482
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)LICR lab; 2)CSHL lab
Growth protocol Limb_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX185806
BioSample SAMN01163824
Named Annotation GSM1000085_mm9_wgEncodeLicrHistoneLimbH3k04me1UE14halfC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000085_mm9_wgEncodeLicrHistoneLimbH3k04me1UE14halfC57bl6StdPk.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM1000085_mm9_wgEncodeLicrHistoneLimbH3k04me1UE14halfC57bl6StdSig.bigWig 51.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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