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Series GSE98266 Query DataSets for GSE98266
Status Public on Feb 22, 2018
Title TFEB target in epithelial cells during DSS colitis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary TFEB in IEC has a protective role in DSS colitis. The goal is to examine what genes/pathways are TFEB target during DSS colitis
 
Overall design Epithelial cells are isolated from TFEB flox(WT) and TFEB IEC KO(KO) mice on day0(basal), day4 and day11 during DSS treatment
 
Contributor(s) Murano T, Lassen K, Xavier RJ, Irazoqui J
Citation(s) 29066772
Submission date Apr 27, 2017
Last update date May 15, 2019
Contact name Javier Elbio Irazoqui
Organization name University of Massachusetts Medical School
Department Microbiology and Physiological Systems
Street address 368 Plantation street
City Worcester
State/province MA
ZIP/Postal code 01605
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (12)
GSM2590037 WT1
GSM2590038 WT2
GSM2590039 KO1
Relations
BioProject PRJNA384508
SRA SRP105321

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98266_Murano_DSS_d0_Cuffdiff_gene_differential_expression_testing_.txt.gz 1.3 Mb (ftp)(http) TXT
GSE98266_Murano_DSS_d11_Cuffdiff_gene_differential_expression_testing_.txt.gz 1.3 Mb (ftp)(http) TXT
GSE98266_Murano_DSS_d4_Cuffdiff_gene_differential_expression_testing_.txt.gz 1.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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