GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE97130 Query DataSets for GSE97130
Status Public on Mar 30, 2017
Title Genome-wide analysis of Su(var)3-9 distribution in chromosomes of Drosophila melanogaster [RNA-Seq_SuVar]
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary One of the histone modifications involved in gene silencing is H3K9 methylation, which is found in the chromosomes across different eukaryotes and controlled by SU(VAR)3-9 and its orthologs. Although SU(VAR)3-9 was discovered over two decades ago, little is known about the details of its chromosomal distribution pattern and effect on gene regulation during germ cells development. To fill in this gap, we used RNA-Seq approach to investigate the effect of Su(var)3-9 mutation on gene expression during Drosophila spermatogenesis.
Overall design RNA-Seq gene expression profiling in Su(var)3-9-mutant and wild-type testes of Drosophila melanogaster. Biological replicates were performed for each sample.
Contributor(s) Laktionov PP, Maksimov DA, Belyakin SN, Koryakov DE
Citation(s) 28975408
Submission date Mar 28, 2017
Last update date Sep 10, 2019
Contact name Petr Laktionov
Organization name Institute of molecular and cellular biology SD RAS
Lab Genomics lab
Street address Lavrenitev ave 8/2
City Novosibirsk
ZIP/Postal code 630090
Country Russia
Platforms (1)
GPL16479 Illumina MiSeq (Drosophila melanogaster)
Samples (4)
GSM2552071 Su(var)3-9_Rep1
GSM2552072 Su(var)3-9_Rep2
GSM2552073 WT_Rep1
BioProject PRJNA380783
SRA SRP102608

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97130_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap