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Series GSE96828 Query DataSets for GSE96828
Status Public on Feb 13, 2018
Title Multi-time series RNA-Seq analysis of Enterobacter lignolyticus SCF1during growth in lignin-amended medium
Organism [Enterobacter] lignolyticus SCF1
Experiment type Expression profiling by high throughput sequencing
Summary The production of lignocellulosic-derived biofuels is a highly promising source of alternative energy, but it has been constrained by the lack of a microbial platform capable to efficiently degrade this recalcitrant material and cope with by-products that can be toxic to cells. Species that naturally grow in environments where carbon is mainly available as lignin are promising for finding new ways of removing the lignin that protects cellulose for improved conversion of lignin to fuel precursors.
Overall design Genome-wide transcriptomic analysis of cultures of SCF-1 were sampled along three times during batch anaerobic batch growth in lignin amended medium versus control (unamended medium).
Contributor(s) Orellana R, Markillie LM, Mitchell H, Orr G, DeAngelis KM
Citation(s) 29049419
Submission date Mar 20, 2017
Last update date May 15, 2019
Contact name Lye Meng Markillie
Phone 509 371 7300
Organization name Environmental Molecular Sciences Laboratory
Department Biosystems Dynamics & Simulation
Lab Cell Isolation and Systems Analysis
Street address 902 Battelle Blvd
City Richland
State/province WA
ZIP/Postal code 99352
Country USA
Platforms (1)
GPL23197 AB 5500xl Genetic Analyzer (Enterobacter lignolyticus SCF1)
Samples (18)
GSM2544743 T1G1
GSM2544744 T1G2
GSM2544745 T1G3
BioProject PRJNA379844
SRA SRP102196

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96828_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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