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Series GSE95496 Query DataSets for GSE95496
Status Public on Apr 10, 2017
Title Affymetrix SNP array data for acute myeloid leukemia samples
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Pediatric patients with de novo acute myeloid leukemia. To define genomic architecture, we performed genome-wide copy number abberation analysis in 460 paired diagnostic-remission bone marrow aspirates.
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from cryopreserved diagnostic and remission bone marrow samples.
Copy number aberration analysis of Affymetrix 6.0 SNP arrays (254 sample pairs) and Illumina 2.5M Omni arrays (206 sample pairs) was performed for 460 acute myeloid leukemia samples.
This Series represents the Affymetrix dataset.
Contributor(s) Aplenc R, Meshinchi S
Citation(s) 28411282
Submission date Feb 28, 2017
Last update date Nov 27, 2018
Contact name Richard Aplenc
Phone (215) 590-3025
Organization name Children's Hospital of Philadelphia
Department Division of Oncology
Street address 3501 Civic Center Blvd
City Philadelphia, PA
State/province PA
ZIP/Postal code 19104
Country USA
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (508)
GSM2513273 AML Patient A001_N Remission
GSM2513274 AML Patient A001_T Diagnostic
GSM2513275 AML Patient A002_N Remission
This SubSeries is part of SuperSeries:
GSE95691 SNP array data for acute myeloid leukemia samples
BioProject PRJNA377277

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95496_RAW.tar 20.6 Gb (http)(custom) TAR (of CEL, CHP)
Processed data provided as supplementary file
Processed data included within Sample table

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