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Series GSE95449 Query DataSets for GSE95449
Status Public on Sep 08, 2017
Title Experience-dependent Epigenomic Reorganization in the Hippocampus
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary To further investigate epigenetic regulation of memory, we utilized whole-genome sequencing tools to systematically characterize memory-related changes in gene expression and DNA methylation status following memory acquisition.
 
Overall design Experience-dependent alternations in gene expression and DNA methylation in the CA1 area of the hippocampus of Sprague-Dawley rats were observed 1 hr and 24 hr after contextual threat recognition training.
 
Contributor(s) Kennedy AJ, Day JJ, Sweatt JD
Citation(s) 28620075
Submission date Feb 27, 2017
Last update date May 15, 2019
Contact name Andrew John Kennedy
E-mail(s) akennedy@bates.edu
Organization name Bates College
Department Chemistry
Lab Kennedy
Street address 5 Andrews Rd, Dana 322
City Lewiston
State/province ME
ZIP/Postal code 04240
Country USA
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (60)
GSM2514229 Naive_RNA_Rep1
GSM2514230 Naive_RNA_Rep2
GSM2514231 Naive_RNA_Rep3
Relations
BioProject PRJNA377156
SRA SRP100796

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95449_MBDseq_RPKM_500nt_GRCm38.txt.gz 311.5 Mb (ftp)(http) TXT
GSE95449_RNAseq_FPKM_GRCm38.txt.gz 3.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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