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Series GSE9531 Query DataSets for GSE9531
Status Public on Jun 15, 2008
Title Rhesus Macaque gene expression data obtained using Rhesus Macaque Array or Human Genome U133 Plus 2.0 Array
Platform organisms Macaca mulatta; Homo sapiens
Sample organism Macaca mulatta
Experiment type Expression profiling by array
Summary The primary goal of this study was to compare the performances of Rhesus Macaque Genome Array and Human Genome U133 Plus 2.0 Array with respect to the detection of differential expressions when rhesus macaque RNA extracts were labeled and hybridized.
The secondary goal of this study was to investigate the effect of mismatch position on signal strength in Affymetrix GeneChips by examining naturally occurring mismatches between rhesus macaque transcripts and human probes from Human Genome U133 Plus 2.0 Array.
The primary goal of this study was to compare the performances of Rhesus Macaque Genome Array and Human Genome U133 Plus 2.0 Array with respect to the detection of differential expressions when rhesus macaque RNA extracts were labeled and hybridized.
The secondary goal of this study was to investigate the effect of mismatch position on signal strength in Affymetrix GeneChips by examining naturally occurring mismatches between rhesus macaque transcripts and human probes from Human Genome U133 Plus 2.0 Array.
Keywords: cross hybridization
 
Overall design Rhesus macaque RNA from five sources (immortalized fibroblasts, cerebral cortex, pancreas, testes and thymus) was divided into two sets of aliquots of equal amount. Samples from each of the five sources were labeled and hybridized with either Rhesus Macaque Genome Array or two Human Genome U133 Plus 2.0 Array.
Rhesus macaque RNA from five sources (immortalized fibroblasts, cerebral cortex, pancreas, testes and thymus) was divided into two sets of aliquots of equal amount. Samples from each of the five sources were labeled and hybridized with either Rhesus Macaque Genome Array or two Human Genome U133 Plus 2.0 Array.
 
Contributor(s) Duan F, Spindel ER, Norgren RB
Citation(s) 20429935
Submission date Nov 06, 2007
Last update date Mar 25, 2019
Contact name Fenghai Duan
E-mail(s) fduan@stat.brown.edu
Phone 401-863-2175
Organization name Brown University
Department Biostatistics
Street address 121 S. Main Street
City Providence
State/province RI
ZIP/Postal code 02912
Country USA
 
Platforms (2)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
GPL3535 [Rhesus] Affymetrix Rhesus Macaque Genome Array
Samples (20)
GSM241366 Cerebral cortex, technical replicate 1
GSM241367 Cerebral cortex, technical replicate 2
GSM241368 Fibroblasts, technical replicate 1
Relations
BioProject PRJNA103337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9531_RAW.tar 91.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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