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Status |
Public on Jun 15, 2008 |
Title |
Rhesus Macaque gene expression data obtained using Rhesus Macaque Array or Human Genome U133 Plus 2.0 Array |
Platform organisms |
Macaca mulatta; Homo sapiens |
Sample organism |
Macaca mulatta |
Experiment type |
Expression profiling by array
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Summary |
The primary goal of this study was to compare the performances of Rhesus Macaque Genome Array and Human Genome U133 Plus 2.0 Array with respect to the detection of differential expressions when rhesus macaque RNA extracts were labeled and hybridized. The secondary goal of this study was to investigate the effect of mismatch position on signal strength in Affymetrix GeneChips by examining naturally occurring mismatches between rhesus macaque transcripts and human probes from Human Genome U133 Plus 2.0 Array. The primary goal of this study was to compare the performances of Rhesus Macaque Genome Array and Human Genome U133 Plus 2.0 Array with respect to the detection of differential expressions when rhesus macaque RNA extracts were labeled and hybridized. The secondary goal of this study was to investigate the effect of mismatch position on signal strength in Affymetrix GeneChips by examining naturally occurring mismatches between rhesus macaque transcripts and human probes from Human Genome U133 Plus 2.0 Array. Keywords: cross hybridization
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Overall design |
Rhesus macaque RNA from five sources (immortalized fibroblasts, cerebral cortex, pancreas, testes and thymus) was divided into two sets of aliquots of equal amount. Samples from each of the five sources were labeled and hybridized with either Rhesus Macaque Genome Array or two Human Genome U133 Plus 2.0 Array. Rhesus macaque RNA from five sources (immortalized fibroblasts, cerebral cortex, pancreas, testes and thymus) was divided into two sets of aliquots of equal amount. Samples from each of the five sources were labeled and hybridized with either Rhesus Macaque Genome Array or two Human Genome U133 Plus 2.0 Array.
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Contributor(s) |
Duan F, Spindel ER, Norgren RB |
Citation(s) |
20429935 |
Submission date |
Nov 06, 2007 |
Last update date |
Mar 25, 2019 |
Contact name |
Fenghai Duan |
E-mail(s) |
fduan@stat.brown.edu
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Phone |
401-863-2175
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Organization name |
Brown University
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Department |
Biostatistics
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Street address |
121 S. Main Street
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City |
Providence |
State/province |
RI |
ZIP/Postal code |
02912 |
Country |
USA |
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Platforms (2) |
GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
GPL3535 |
[Rhesus] Affymetrix Rhesus Macaque Genome Array |
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Samples (20)
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GSM241366 |
Cerebral cortex, technical replicate 1 |
GSM241367 |
Cerebral cortex, technical replicate 2 |
GSM241368 |
Fibroblasts, technical replicate 1 |
GSM241369 |
Fibroblasts, technical replicate 2 |
GSM241370 |
Pancreas, technical replicate 1 |
GSM241371 |
Pancreas, technical replicate 2 |
GSM241372 |
Testis, technical replicate 1 |
GSM241373 |
Testis, technical replicate 2 |
GSM241374 |
Thymus, technical replicate 1 |
GSM241375 |
Thymus, technical replicate 2 |
GSM241376 |
Cerebral cortex, technical replicate 3 |
GSM241377 |
Cerebral cortex, technical replicate 4 |
GSM241378 |
Fibroblasts, technical replicate 3 |
GSM241379 |
Fibroblasts, technical replicate 4 |
GSM241380 |
Pancreas, technical replicate 3 |
GSM241381 |
Pancreas, technical replicate 4 |
GSM241382 |
Testis, technical replicate 3 |
GSM241383 |
Testis, technical replicate 4 |
GSM241384 |
Thymus, technical replicate 3 |
GSM241385 |
Thymus, technical replicate 4 |
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Relations |
BioProject |
PRJNA103337 |
Supplementary file |
Size |
Download |
File type/resource |
GSE9531_RAW.tar |
91.2 Mb |
(http)(custom) |
TAR (of CEL) |
Processed data included within Sample table |
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