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Series GSE93031 Query DataSets for GSE93031
Status Public on Jul 17, 2017
Title Defects in dosage compensation impact global gene regulation in the mouse trophoblast
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary X chromosome inactivation (XCI) is critical for the development of the extraembryonic tissue as well as the embryonic tissue. Here we carried out transcriptomic analysis of the trophoblast isolated from two different Xist mutant embyros at E7.5 in comparison with wild-type.
Overall design Allele-specific RNA-seq analysis of the trophoblast isolated from E7.5 embryos. Embryos were obtained from JF1 females crossed with B6 males carrying respective Xist mutations as well as B6 wild-type males.
Contributor(s) Sakata Y, Nagao K, Hoki Y, Sasaki H, Obuse C, Sado T
Citation(s) 28684628
Submission date Dec 30, 2016
Last update date May 15, 2019
Contact name Koji Nagao
Organization name Osaka University
Department Graduate School of Science
Lab Obuse Lab.
Street address 1-1 Machikaneyama
City Toyonaka
State/province Osaka
ZIP/Postal code 560 0043
Country Japan
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (16)
GSM2442795 WT_TB_rep1
GSM2442796 WT_TB_rep2
GSM2442797 WT_TB_rep3
BioProject PRJNA359489
SRA SRP095851

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93031_allelic_expression2.txt.gz 3.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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