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Series GSE92897 Query DataSets for GSE92897
Status Public on Jan 01, 2017
Title Exogenous miRNA expression profiling in serum of pig and rat fed with different diets
Organisms Sus scrofa; Rattus norvegicus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed carefully designed and controlled animal feeding studies. We devided 9 adult rats in three group and each group fed with one type of diets in 28 days: rice, potatoes and chow. We fed piglets in triplicate either with cow milk or let them feed from sows milk for 4 weeks followed by 7 weeks of maize diet. Based on the small RNA sequencing data from 9 rat and 6 pig serum samples, we detected no transfer of plant miRNAs into rat blood, or bovine milk sequences into piglet blood.
Overall design The miRNA profiles in serum of chow-fed, potato-fed and rice-fed rats in 28 days and the miRNA profiles in serum of cow milk and sows milk fed pigs were generated by sequencing, in triplicate, Illumina TruSeq small RNA.
Contributor(s) Kang W, Bang-Bertelsen C, Holm A, Houben A, Holt Müller A, Thymann T, Pociot F, Estivill X, Friedländer MR
Citation(s) 28062594
Submission date Dec 23, 2016
Last update date May 15, 2019
Contact name Marc Riemer Friedländer
Organization name Stockholm University / SciLifeLab
Department Department of Molecular Biosciences, The Wenner-Gren Institute
Lab Lab Friedländer
Street address Svante Arrhenius väg 20C
City Stockholm
ZIP/Postal code 10691
Country Sweden
Platforms (2)
GPL11429 Illumina HiSeq 2000 (Sus scrofa)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (15)
GSM2439540 potato-fed_rat_rep1
GSM2439541 potato-fed_rat_rep2
GSM2439542 potato-fed_rat_rep3
BioProject PRJNA358730
SRA SRP095622

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE92897_clade-specific_miRNA_family_countTable.txt.gz 342 b (ftp)(http) TXT
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Processed data are available on Series record

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