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GEO accession:
Series GSE92390
Query DataSets for GSE92390
Status
Public on Dec 15, 2016
Title
HiC of selected non-small cell lung carcinoma cell lines
Organism
Homo sapiens
Experiment type
Other
Summary
Utilizing HiC to characterize the three-dimensional architecture of two NSCLC lines: NCIH460A, NCIH460B.
Overall design
Cell lines are cultured in accordance with supplier protocols and assayed following the Dekker Lab's HiC Assay protocol:
http://www.jove.com/video/1869/hi-c-a-method-to-study-the-three-dimensional-architecture-of-genomes. http://www.jove.com/video/1869/hi-c-a-method-to-study-the-three-dimensional-architecture-of-genomes
Contributor(s)
Stamatoyannopoulos J
Citation(s)
27367781
Submission date
Dec 14, 2016
Last update date
May 15, 2019
Contact name
Job Dekker
Organization name
UMass Medical School
Department
Program in Systems Biology
Lab
Dekker Labaratory
Street address
368 Plantation Street
City
Worcester
State/province
Massachusetts
ZIP/Postal code
01605
Country
USA
Platforms (1)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2428900
DS23107
GSM2428901
DS23114
Relations
BioProject
PRJNA357449
SRA
SRP095110
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
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Supplementary file
Size
Download
File type/resource
GSE92390_RAW.tar
3.2 Gb
(http)
(custom)
TAR (of TAR)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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