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Series GSE90944 Query DataSets for GSE90944
Status Public on Jul 28, 2017
Title RNA-seq in HT-29 colorectal cancer cells after F. nucleatum treatment
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To elucidate whether F. nucleatum plays a role in colorectal cancer tumorigenesis, RNA-seq analysis was performed to compare the gene expression profiles of F. nucleatum treated HT-29 cell line or not.
Overall design RNA-seq was performed in HT-29 colorectal cancer cells after F. nucleatum treatment
Contributor(s) Chen H, Hong J
Citation(s) 28753429
Submission date Dec 06, 2016
Last update date May 15, 2019
Contact name Haoyan Chen
Organization name Renji Hospital
Street address 145 Shandong Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200001
Country China
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (6)
GSM2417927 FN Treatment, 1
GSM2417928 FN Treatment, 2
GSM2417929 FN Treatment, 3
BioProject PRJNA356417
SRA SRP094643

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90944_RAW.tar 1.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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