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Series GSE90688 Query DataSets for GSE90688
Status Public on Jul 27, 2017
Title Genome-wide data of RNAs associated to Mmi1 in wild type Schizosaccharomyces pombe cells
Organism Schizosaccharomyces pombe
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Mmi1 is a YTH domain containing protein. We used Solexa Deep Sequencing to identify the mRNas and lncRNAs specifically associated to Mmi1.
 
Overall design Solexa libraries were made with RNA purified from anti-Mmi1immunoprecipitations or irrelevant immunoprecipitations from wild type S. pombe cells. Libraries were made in duplicates and sequenced using Illumina HiSeq2000
 
Contributor(s) Touat-Todeschini L, Reuter M, Sachidanandam R, Thierry-Mieg N, Gilquin B, Pillai R, Verdel A
Citation(s) 28765164
Submission date Nov 30, 2016
Last update date Oct 26, 2017
Contact name Ravi Sachidanandam
E-mail(s) ravi.mssm@gmail.com
Organization name Girihlet Inc.
Street address 2945 Webster St
City Oakland
State/province CA
ZIP/Postal code 94609
Country USA
 
Platforms (1)
GPL13988 Illumina HiSeq 2000 (Schizosaccharomyces pombe)
Samples (4)
GSM2410428 BC2/Control IP
GSM2410429 BC1/Mmi1 IP
GSM2410430 BC3/Control IP
Relations
BioProject PRJNA355389

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90688_RAW.tar 326.7 Mb (http)(custom) TAR (of TXT)
Raw data not provided for this record
Processed data provided as supplementary file

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