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Series GSE90651 Query DataSets for GSE90651
Status Public on Dec 01, 2016
Title SNP data from hepatocellular carcinoma PDX
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Hepatocellular carcinoma samples were obtained after patients provided written informed consent and with the approval of the institutional research ethics board at the Liver Cancer Institute of Zhongshan Hospital, Fudan University (Shanghai, China). Fresh tumor tissues were implanted in NOD/SCID mice. Tumor lines were successfully maintained through multiple rounds of serial transplantation.
We used microarrays to evaluate the genotype similarity between patient tumor and patient-derived xenograft (PDX).
Overall design PDX (F0, F2, F4) for DNA extraction and hybridization on Affymetrix microarrays.
Contributor(s) Li H, Hu B
Citation(s) 31417635
Submission date Nov 29, 2016
Last update date Aug 21, 2019
Contact name hong li
Organization name SIBS
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (39)
GSM2409901 HMR210-F0
GSM2409902 HMR210-F2
GSM2409903 HMR210-F4
This SubSeries is part of SuperSeries:
GSE90653 Data from hepatocellular carcinoma PDX
BioProject PRJNA355392

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90651_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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