GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE89418
Query DataSets for GSE89418
Status
Public on Jan 01, 2018
Title
EZH1 as a key epigenetic barrier to definitive haematopoiesis during embryonic development
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29342143
Submission date
Nov 02, 2016
Last update date
May 15, 2019
Contact name
Melissa Kinney
E-mail(s)
melissa.kinney@childrens.harvard.edu
Organization name
Boston Children's Hospital
Street address
1 Blackfan Circle
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platforms (4)
Less...
More...
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (58)
Less...
More...
GSM2371275
34-iPS 5F +shEZH1 D4 day 4 rep 1
GSM2371276
34-iPS 5F +shEZH1 D6 day 4 rep 1
GSM2371277
MSC-iPS 5F +shEZH1 D4 day 4 rep 1
GSM2371278
MSC-iPS 5F +shEZH1 D4 day 4 rep 2
GSM2371279
MSC-iPS 5F +shEZH1 D6 day 4 rep 1
GSM2371280
MSC-iPS 5F +shEZH1 D6 day 4 rep 2
GSM2371281
34-iPS 5F +shLUC C11 day 4 rep 1
GSM2371282
34-iPS 5F +shLUC F8 day 4 rep 1
GSM2371283
MSC-iPS 5F +shLUC C11 day 4 rep 1
GSM2371284
MSC-iPS 5F +shLUC C11 day 4 rep 2
GSM2371285
MSC-iPS 5F +shLUC F8 day 4 rep 1
GSM2371286
MSC-iPS 5F +shLUC F8 day 4 rep 2
GSM2371287
34-iPS 5F +shEZH1 D4 day 28 rep 1
GSM2371288
34-iPS 5F +shEZH1 D4 day 28 rep 2
GSM2371289
34-iPS 5F +shEZH1 D6 day 28 rep 1
GSM2371290
34-iPS 5F +shEZH1 D6 day 28 rep 2
GSM2371291
MSC-iPS 5F +shEZH1 D4 day 28 rep 1
GSM2371292
MSC-iPS 5F +shEZH1 D4 day 28 rep 2
GSM2371293
MSC-iPS 5F +shEZH1 D4 day 28 rep 3
GSM2371294
MSC-iPS 5F +shEZH1 D6 day 28 rep 1
GSM2371295
MSC-iPS 5F +shEZH1 D6 day 28 rep 2
GSM2371296
MSC-iPS 5F +shEZH1 D6 day 28 rep 3
GSM2371297
34-iPS 5F +shLUC C11 day 28 rep 1
GSM2371298
34-iPS 5F +shLUC C11 day 28 rep 2
GSM2371299
34-iPS 5F +shLUC F8 day 28 rep 1
GSM2371300
34-iPS 5F +shLUC F8 day 28 rep 2
GSM2371301
MSC-iPS 5F +shLUC C11 day 28 rep 1
GSM2371302
MSC-iPS 5F +shLUC C11 day 28 rep 2
GSM2371303
MSC-iPS 5F +shLUC F8 day 28 rep 1
GSM2371304
MSC-iPS 5F +shLUC F8 day 28 rep 2
GSM2371305
wt YS count
GSM2371306
EZH1 KO YS count
GSM2371307
EZH1 HET YS count
GSM2371308
wt AGM count
GSM2371309
EZH1 KO AGM count
GSM2371310
EZH1 HET AGM count
GSM2371311
ATAC-seq_5F_C11-shLuc-rep1
GSM2371312
ATAC-seq_5F_F8-shLuc-rep2
GSM2371313
ATAC-seq_5F_D4-shEZH1-rep1
GSM2371314
ATAC-seq_5F_D6-shEZH1-rep2
GSM2371315
ATAC-seq_Ezh1_WT_AGM
GSM2371316
ATAC-seq_Ezh1_HET_AGM
GSM2371317
ATAC-seq_Ezh1_KO_AGM
GSM2371318
ChIP-seq_5F_BirA-Only_Input
GSM2371319
ChIP-seq_5F_BirA-Only_rep1
GSM2371320
ChIP-seq_5F_BirA-Only_rep2
GSM2371321
ChIP-seq_5F_FB-Ezh1_rep1
GSM2371322
ChIP-seq_5F_FB-Ezh1_rep2
GSM2371323
ChIP-seq_5F_H3K4me3
GSM2371324
ChIP-seq_5F_H3K27me3
GSM2507990
ChIP-seq_5F_shLuc_H3K4me3_rep1
GSM2507991
ChIP-seq_5F_shLuc_H3K4me3_rep2
GSM2507992
ChIP-seq_5F_shEZH1_H3K4me3_rep1
GSM2507993
ChIP-seq_5F_shEZH1_H3K4me3_rep2
GSM2507994
ChIP-seq_5F_shLuc_H3K27me3_rep1
GSM2507995
ChIP-seq_5F_shLuc_H3K27me3_rep2
GSM2507996
ChIP-seq_5F_shEZH1_H3K27me3_rep1
GSM2507997
ChIP-seq_5F_shEZH1_H3K27me3_rep2
This SuperSeries is composed of the following SubSeries:
GSE89415
RNA-seq analysis of EZH1 knockdown in 5F cells, or EZH1 heterozygous and homozygous knockout YS and AGM cells
GSE89416
ATAC-seq analysis in 5F cells and AGM cells with EZH1 depletion
GSE89417
ChIP-seq analysis of EZH1, H3K4me3 and H3K27me3 in 5F cells
Relations
BioProject
PRJNA352132
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE89418_RAW.tar
4.9 Gb
(http)
(custom)
TAR (of BED, TXT, WIG)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|